FastQCFastQC Report
Fri 10 May 2024
EGAF00000773607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000773607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences282911326
Total Bases35.3 Gbp
Sequences flagged as poor quality0
Sequence length125
%GC19

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG6333820.2238800436006581Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4621740.16336355512327563No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)