FastQCFastQC Report
Sun 19 May 2024
EGAF00000773638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000773638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences185532492
Total Bases23.1 Gbp
Sequences flagged as poor quality0
Sequence length125
%GC20

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCACGATCTCGTA5400530.29108270695787347Illumina Paired End PCR Primer 2 (97% over 42bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)