FastQCFastQC Report
Mon 13 May 2024
EGAF00000773675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000773675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences276219740
Total Bases34.5 Gbp
Sequences flagged as poor quality0
Sequence length125
%GC20

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG7244980.2622904503494211Illumina Single End PCR Primer 1 (100% over 50bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2850440.10319465219973056No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)