FastQCFastQC Report
Fri 10 Feb 2023
EGAF00000776257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000776257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143607022
Sequences flagged as poor quality0
Sequence length95
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAATAATCTCGATCTCCTAACCTCGTAATCCGCCCGCCTCGACCTCCC4083120.2843259294103321No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAAC3998420.27842788913205097No Hit
CAAACAAAAACGCTCCTCACTTTCCAAACTAAACAACCAAACAAAAAAAC1487530.10358337491324066No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)