FastQCFastQC Report
Thu 9 Feb 2023
EGAF00000776263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000776263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104323344
Sequences flagged as poor quality0
Sequence length98
%GC34

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC4177450.40043290790218533No Hit
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTC2305400.22098601440536644No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC1410000.13515671046740987No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTC1106320.10604721413071268No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)