FastQCFastQC Report
Mon 23 Jan 2023
EGAF00000776265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000776265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144409534
Sequences flagged as poor quality0
Sequence length98
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACA13477400.9332763306334054No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA9735630.6741680919765312No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTTAAAAAACTAAAAC4619350.31987846453406604No Hit
CAAATTCACACCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA3903010.27027370644378645No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTCGAAAAACTAAAAC3453630.23915526242193952No Hit
CAAATTCACACCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACA2972540.20584098000066947No Hit
CAAACGCGATAACGAACGCCTATAATCCCAACTACTCGAAAAACTAAAAC2355390.16310488198099166No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAAC2339920.1620336230708978No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCTAAATAACTAAAACTACA2028120.14044225085581954No Hit
CAAATTCATACCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACA1534730.10627622411689246No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTCAAAAAACTAAAAC1527680.10578802920311342No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)