FastQCFastQC Report
Sat 25 May 2024
EGAF00000776269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000776269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155212856
Total Bases14.7 Gbp
Sequences flagged as poor quality0
Sequence length95
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACA9459310.6094411406230422No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA6937340.44695653303357813No Hit
CAAAATAATCTCGATCTCCTAACCTCGTAATCCGCCCGCCTCGACCTCCC2231350.14376064312610806No Hit
CAAATTCACACCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA2185780.140824674986974No Hit
CAAATTCACACCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACA2130640.13727213421032597No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1633600.10524901365129187No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)