FastQCFastQC Report
Tue 24 Jan 2023
EGAF00000776278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000776278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127008291
Sequences flagged as poor quality0
Sequence length98
%GC34

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGC2946110.23196202206988203No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTCGAGTAGTTGGGATTATA1967340.15489854910338097No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT1701310.13395267242829054No Hit
CGGGATGGTTTCGATTTTTTGATTTCGTGATTCGTTCGTTTCGGTTTTTT1617660.1273664882239853No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)