FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000780754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000780754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16751499
Sequences flagged as poor quality0
Sequence length42
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATC7609514.5425845173617TruSeq Adapter, Index 6 (100% over 42bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)