FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000782638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000782638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42974
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACAGGGAGGGGAACAACACACACTGGGGCCTTCCGGGAGACAGAGCGT4891.1378973332712803No Hit
ACACAGGGAGGGGAACAACACACACTGGGGCCTTTCGGGAGGCAGAGCGT4210.9796621212826361No Hit
ACACAGGGAGGGGAACATCACACACCAGGGCCTGTCAGGGGGTGGGGGGC900.2094289570437939No Hit
ACACAGGGAGGGGAACATCACACACTGGGGCCTGTCAGGGGGTGGGGGGC600.13961930469586262No Hit
ACACAGGGAGGGGAACATTACACACCAGGGCCTATCAGGGGGTAGGGGCA450.10471447852189696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)