FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000782673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000782673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences167180
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN5500.32898672089962916No Hit
ACACAGGGAGGGGAACATCACACACTGGGGCCTGTCAGGGGGTGGGGGGC4610.2757506878813255No Hit
ACACAGGGAGGGGAACATCACACACCAGGGCCTGTCAGGGGGTGGGGGGC4090.24464648881445147No Hit
ACACAGGGAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGA2580.15432467998564423No Hit
ACACAGGGAGGGGAACAACACACACTGGGGCCTTTCGGGAGGCAGAGCGT2540.15193204928819237No Hit
ACACAGGGAGGGGAACATCACACACCGGGGCCTGTCAGGGGGTGGGGGGC2040.12202416557004427No Hit
ACACAGGGAGGGGAACATCACACACTGGGGCCTGTTGGGGGGTGGGGGGC2040.12202416557004427No Hit
ACACAGGGAGGGGAACATCACACACCAGGGCCTGTCGGGGGGTGGGGGGC2000.11963153487259241No Hit
ACACAGGGAGGGGAACATCACACACCAGGGCCTGTTGGGGGGTGGGGGGC1790.1070702237109702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)