FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000782692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000782692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59575
Sequences flagged as poor quality0
Sequence length35-151
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACAGGGAGGGGAACAACACACACTGGGGCCTTTCGGGAGGCAGAGCGT7251.2169534200587495No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3600.6042803189257239No Hit
ACACAGGGAGGGGAACATTGCAAACCACCATGGCA3310.555602182123374No Hit
ACACAGGGAGGGGAACAACACACACTGGGGCCTTCCGGGAGACAGAGCGT2520.4229962232480067No Hit
ACACAGGGAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGA2500.41963911036508605No Hit
ACACAGGGAGGGGAACATCACACACTGGGGCCTGTCAGGGGGTGGGGGGC980.16449853126311373No Hit
ACACAGGGAGGGGAACATCACACACCAGGGCCTGTCAGGGGGTGGGGGGC830.13932018464120854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)