FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000782693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000782693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55190
Sequences flagged as poor quality0
Sequence length35-151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACAGGGAGGGGAACAACACACACTGGGGCCTTTCGGGAGGCAGAGCGT4280.775502808479797No Hit
ACACAGGGAGGGGAACATTGCAAACCACCATGGCA3900.7066497553904693No Hit
ACACAGGGAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGA2820.5109621308208009No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2240.40587062873709No Hit
ACACAGGGAGGGGAACAACACACACTGGGGCCTTCCGGGAGACAGAGCGT1800.3261460409494474No Hit
ACACAGGGAGGGGAACATCACACACCAGGGCCTGTCAGGGGGTGGGGGGC950.17213263272331944No Hit
ACACAGGGAGGGGAACATCACACACTGGGGCCTGTCAGGGGGTGGGGGGC910.16488494292444283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)