FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000782695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000782695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28815
Sequences flagged as poor quality0
Sequence length35-151
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACAGGGAGGGGAACAACACACACTGGGGCCTTTCGGGAGGCAGAGCGT2530.8780149227832725No Hit
ACACAGGGAGGGGAACAACACACACTGGGGCCTTCCGGGAGACAGAGCGT1820.6316154780496269No Hit
ACACAGGGAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGA1200.41644976574700676No Hit
ACACAGGGAGGGGAACATTGCAAACCACCATGGCA770.267221933020996No Hit
ACACAGGGAGGGGAACATCACACACCAGGGCCTGTCAGGGGGTGGGGGGC540.18740239458615304No Hit
ACACAGGGAGGGGAACATCACACACTGGGGCCTGTCAGGGGGTGGGGGGC520.18046156515703626No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN410.14228700329689398No Hit
ACACAGGGAGGGGAACATCACACACCAGGGCCTGTTGTGGGGTGGGGGGA320.11105327086586847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)