FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000782717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000782717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42325
Sequences flagged as poor quality0
Sequence length35-151
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACAGGGAGGGGAACAACACACACTGGGGCCTTTCGGGAGGCAGAGCGT5941.403425871234495No Hit
ACACAGGGAGGGGAACAACACACACTGGGGCCTTCCGGGAGACAGAGCGT3340.7891317188422918No Hit
ACACAGGGAGGGGAACATCACACTCTGGGGACTGTTGTGGGGTGGGGGGA1600.37802717070289427No Hit
ACACAGGGAGGGGAACATCACACACCAGGGCCTGTCAGGGGGTGGGGGGC590.13939751919669227No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN590.13939751919669227No Hit
ACACAGGGAGGGGAACATCACACACTGGGGCCTGTCAGGGGGTGGGGGGC560.132309509746013No Hit
ACACAGGGAGGGGAACATTGCAAACCACCATGGCA450.106320141760189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)