FastQCFastQC Report
Wed 8 May 2024
EGAF00000782765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000782765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86141
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCTGTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT6652977.2326766580374No Hit
TCACTGTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT5890.6837626681835596No Hit
TCCCTGTTCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCTC5550.6442924971848482No Hit
TCCTGTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCTC5230.6071441009507668No Hit
TCCCTGTTCCCACTCATACAGGACTTGGGCGGTATCCACATCCTCTTCCT4990.5792828037752057No Hit
TCCCTGTTCTCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT2860.3320137913421019No Hit
TCCCTGTTCCCACTCTTACAGGACTTGGGAGGTATCCACATCCTCTTCCT2840.3296920165774718No Hit
TCCCTGTTCCCACTCATACAGGCCTTGGGAGGTATCCACATCCTCTTCCT2710.3146004806073763No Hit
TCCCTGTTCCCACTAATACAGGACTTGGGAGGTATCCACATCCTCTTCCT2470.28673918343181526No Hit
TCCCTGTTCACACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT2260.2623605484031994No Hit
TCCCTGTTCCCACTCATACAGGACTTGGGAGGCATCCACATCCTCTTCCT2220.25771699887393923No Hit
TCCCTGTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCTC2180.25307344934467907No Hit
TCCCTGTTCCCACTCATACAGGGCTTGGGAGGTATCCACATCCTCTTCCT2140.24842989981541888No Hit
CCCTGTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCTC1900.22056860263985792No Hit
TCCTTGTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT1850.21476416572828272No Hit
TCCCTGTTGCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT1810.21012061619902256No Hit
TCCCTGTTCCCACTCATCAGGACTTGGGAGGTATCCACATCCTCTTCCTC1790.20779884143439245No Hit
TCCCGGTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT1780.2066379540520774No Hit
TACCTGTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT1670.19386819284661197No Hit
TCCCGTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCTC1640.19038553069966682No Hit
GCCCTGTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT1600.18574198117040666No Hit
TCCCTGTTCCCACTCATACAGGACTTGGGTGGTATCCACATCCTCTTCCT1590.18458109378809162No Hit
TCCCTGTTCCCGCTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT1570.18225931902346154No Hit
TCCCTGTTCCCACTCATACGGGACTTGGGAGGTATCCACATCCTCTTCCT1570.18225931902346154No Hit
TCCCTGTTCCCACTCATACAGGACTTGGGAGGTATCAACATCCTCTTCCT1550.17993754425883146No Hit
TCCCTGTTCCCACTCATTCAGGACTTGGGAGGTATCCACATCCTCTTCCT1540.17877665687651642No Hit
TCCCTGTTCCCACTCATACAGGACTTGGGAGGTCTCCACATCCTCTTCCT1520.17645488211188634No Hit
TCTCTGTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT1510.17529399472957127No Hit
TCCCTGTTCCCACTCATACAGGACTTGGGGGGTATCCACATCCTCTTCCT1490.1729722199649412No Hit
TCCCTGTTCCCACTCATAAAGGACTTGGGAGGTATCCACATCCTCTTCCT1460.16948955781799607No Hit
TCCCTGTTCCCCTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCTC1410.16368512090642084No Hit
TCCCTTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCTC1410.16368512090642084No Hit
TCCCTGTTCCCATCATACAGGACTTGGGAGGTATCCACATCCTCTTCCTC1390.1613633461417908No Hit
TCCCTGATCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT1390.1613633461417908No Hit
TCCCTGTTCCCACTCATACAGGACTTGGGAGGAATCCACATCCTCTTCCT1330.15439802184790055No Hit
TCCCTGTTCCCACTATACAGGACTTGGGAGGTATCCACATCCTCTTCCTC1320.15323713446558548No Hit
TCCCTGTTCCAACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT1250.1451109227893802No Hit
TCCCTGTTCCCACTCTACAGGACTTGGGAGGTATCCACATCCTCTTCCTC1230.14278914802475012No Hit
TCCCTGTTCCCACCATACAGGACTTGGGAGGTATCCACATCCTCTTCCTC1220.14162826064243506No Hit
TCCCTGTTCCTACTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT1180.13698471111317492No Hit
TCCCTGTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCTCCTCCT1150.13350204896622977No Hit
TCCCTGTTCCCACTCATACAGGACTTGGGAGGTATCCACATCCCCTTCCT1100.12769761205465457No Hit
TCCCTGTTCCCACTCATACCGGACTTGGGAGGTATCCACATCCTCTTCCT1100.12769761205465457No Hit
TCCCTGTTCCCACTCATATAGGACTTGGGAGGTATCCACATCCTCTTCCT1090.12653672467233953No Hit
TCCCTGTTCCCAATCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT1080.1253758372900245No Hit
TCCCTGTTCCCACTTATACAGGACTTGGGAGGTATCCACATCCTCTTCCT990.11492785084918913No Hit
TCCCTGTTCCCCCTCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT980.11376696346687408No Hit
TCCCTGTTCCCACGCATACAGGACTTGGGAGGTATCCACATCCTCTTCCT970.11260607608455904No Hit
TCCCTGTTCCCACTCATACAGGACTTGGGAGGTATACACATCCTCTTCCT950.11028430131992896No Hit
TCCCTGTTCCCACTCATACAGGACTTGGGAGGTACCCACATCCTCTTCCT920.10680163917298383No Hit
TCCCTGTTCCCACTCATACAGGAATTGGGAGGTATCCACATCCTCTTCCT880.10215808964372365No Hit
TCCCTGTTCCCACACATACAGGACTTGGGAGGTATCCACATCCTCTTCCT870.10099720226140863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)