FastQCFastQC Report
Fri 6 Jan 2023
EGAF00000796689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000796689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162452819
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGGTTGGATACCACTT3577170.22019747161174225No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGC3368930.20737898060113072No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGA3366360.20722078082252302No Hit
AGTATGGCCCGGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGGTTG3348020.20609183765533792No Hit
ACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGCGT2820050.17359193994657612No Hit
ACTAGTATGGCCCGGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGG2786740.17154149845808464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)