FastQCFastQC Report
Mon 23 Jan 2023
EGAF00000796690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000796690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162452819
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGA3466200.21336656521792952No Hit
GGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGGTTGGATACCACTT3258980.2006108616680884No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGC3237240.1992726269650021No Hit
AGTATGGCCCGGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGGTTG3206840.1974013144087084No Hit
ACTAGTATGGCCCGGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGG2695780.16594233430938493No Hit
ACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGCGT2691230.16566225298928178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)