FastQCFastQC Report
Mon 3 Apr 2023
EGAF00000796899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000796899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57769175
Sequences flagged as poor quality0
Sequence length42
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATC1956590.33869100605989266TruSeq Adapter, Index 5 (100% over 42bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCCCGATGTATC648210.11220689926764577TruSeq Adapter, Index 9 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)