FastQCFastQC Report
Sun 2 Apr 2023
EGAF00000796909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000796909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53990979
Sequences flagged as poor quality0
Sequence length42
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAAATC13219142.448397907361524TruSeq Adapter, Index 19 (97% over 42bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)