FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000798140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000798140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30384544
Sequences flagged as poor quality0
Sequence length42
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAAATC529328617.420982194105004TruSeq Adapter, Index 13 (97% over 42bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGACAAATC362240.11921850793614017TruSeq Adapter, Index 13 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)