FastQCFastQC Report
Sat 25 May 2024
EGAF00000813818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000813818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113209676
Total Bases8.6 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT1551130.13701390683248665No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC1347690.11904371142268794No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA1142290.10090038593520928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)