FastQCFastQC Report
Sat 23 Apr 2022
EGAF00000817532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000817532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length100
%GC24

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAAAAGG358.1108866E-418.86332124-25
GGGAAAA552.849887E-617.96701222-23
AAAGGGG601.17916745E-414.671288526-27
AGGGGAA450.00441827614.63832120-21
GGAAAAG500.00887298113.17580922-23
Produced by FastQC (version 0.11.5)