FastQCFastQC Report
Thu 9 Feb 2023
EGAF00000828742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000828742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112561856
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2873750.2553040703237871No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2745380.24389967414894081No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC2093910.18602305207192035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)