FastQCFastQC Report
Wed 8 May 2024
EGAF00000828887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000828887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences323622582
Total Bases40.4 Gbp
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6821090.21077299234946467No Hit
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4338430.13405832105993146No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3818180.11798249604225704No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3391420.10479552999796535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)