FastQCFastQC Report
Fri 10 May 2024
EGAF00000828891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000828891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences322766513
Total Bases40.3 Gbp
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6561480.2032887469958818No Hit
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4276450.13249360846798874No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3670550.11372152476053178No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3308120.10249266472076675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)