FastQCFastQC Report
Tue 14 May 2024
EGAF00000828932

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000828932
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences226074803
Total Bases22.6 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAAGCGAATCTCGTATGC2800010.12385325400460484TruSeq Adapter, Index 10 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)