FastQCFastQC Report
Tue 14 May 2024
EGAF00000828985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000828985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences267137875
Total Bases20 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT4267500.15974896858036322No Hit
GCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTAC2684850.10050428079507633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)