FastQCFastQC Report
Sun 5 May 2024
EGAF00000829191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000829191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19748113
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAATATCTCGTA2936091.4867699004963157Illumina Paired End Sequencing Primer 2 (100% over 36bp)
TATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATAATATCTCGTA266590.13499517650116746Illumina Paired End PCR Primer 2 (97% over 36bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG216910.10983834252923305Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)