FastQCFastQC Report
Fri 31 Mar 2023
EGAF00000829251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000829251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18232595
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTAGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA1499330.8223349446417255Illumina Paired End PCR Primer 2 (97% over 38bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTAGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAC186940.10253066006237731Illumina Paired End PCR Primer 2 (97% over 38bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTAGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAG183490.10063844450008351Illumina Paired End PCR Primer 2 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)