FastQCFastQC Report
Wed 8 May 2024
EGAF00000829334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000829334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11709710
Total Bases878.2 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCATTCCTGCTGAACCGCTCTTCCGATCAGATCGGAAGAGCGTCGTGT221520.18917633314573973Illumina Paired End Adapter 2 (100% over 30bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)