FastQCFastQC Report
Mon 6 May 2024
EGAF00000829387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000829387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17312301
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCACCGGATCTCGTA2903051.6768712604985323Illumina Paired End Sequencing Primer 2 (100% over 36bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAG400980.23161565871573053Illumina Paired End PCR Primer 2 (97% over 36bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCACCGGATCTCGGA203130.11733275663356361Illumina Paired End Sequencing Primer 2 (100% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)