FastQCFastQC Report
Sat 1 Apr 2023
EGAF00000831332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000831332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39869969
Sequences flagged as poor quality0
Sequence length42
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATC4411751.1065345949980547TruSeq Adapter, Index 2 (100% over 42bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)