FastQCFastQC Report
Fri 22 Nov 2024
EGAF00000853751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000853751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Total Bases86 Mbp
Sequences flagged as poor quality0
Sequence length43
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGAGCAGTAGATCGGAAGAGCGGTTCAGCAGGAATGCCGA83450.41725Illumina Paired End PCR Primer 2 (100% over 32bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCTG25560.1278Illumina Paired End PCR Primer 2 (97% over 41bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)