FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000858309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000858309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1303587
Sequences flagged as poor quality0
Sequence length43
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCTT20560.15771866396335651Illumina Paired End PCR Primer 2 (97% over 43bp)
GAATCCCCCTAAGATCGGAAGAGCGGTTCAGCAGGAATGCCGA14210.10900691706805914Illumina Paired End PCR Primer 2 (100% over 32bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)