FastQCFastQC Report
Sat 10 Sep 2022
EGAF00000859592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000859592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2213876
Sequences flagged as poor quality0
Sequence length35-85
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA34370.1552480807416495No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTAGCTATCTCGTA25230.11396302231922655Illumina Paired End PCR Primer 2 (97% over 38bp)
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG22540.10181238696295547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)