FastQCFastQC Report
Fri 9 Sep 2022
EGAF00000859604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000859604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2075192
Sequences flagged as poor quality0
Sequence length35-85
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGAATGATCTCGTA66050.3182838021734856Illumina Paired End PCR Primer 2 (97% over 36bp)
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA42270.203691995728588No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT21650.10432769594331513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)