FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000859606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000859606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1969829
Sequences flagged as poor quality0
Sequence length71-85
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT30310.15387122435500747No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA29220.1483377491142632No Hit
GACGGCAGTTGCAGCCAAGCAACGCCAGAAAGCCGGCTTCACGCTCAGGA22550.11447694190714017No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA22370.11356315700499892No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG20490.10401918136041251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)