FastQCFastQC Report
Mon 23 Jan 2023
EGAF00000861329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000861329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173519797
Sequences flagged as poor quality0
Sequence length101
%GC22

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGC11252220.6484689467450219TruSeq Adapter, Index 11 (100% over 50bp)
AAGTAGAAGATGGTATATGAGATGTAGTTGTGATTGGAGTTTAGATGTGT7163000.4128059232342232No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATG6985450.40257366137882233TruSeq Adapter, Index 11 (100% over 49bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)