FastQCFastQC Report
Sat 17 Dec 2022
EGAF00000861331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000861331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences189809919
Sequences flagged as poor quality0
Sequence length101
%GC22

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGC13460630.7091636765305189TruSeq Adapter, Index 11 (100% over 50bp)
AAGTAGAAGATGGTATATGAGATGTAGTTGTGATTGGAGTTTAGATGTGT8329250.43882058661012335No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATG7695450.40542928633777037TruSeq Adapter, Index 11 (100% over 49bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)