FastQCFastQC Report
Mon 23 Jan 2023
EGAF00000861333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000861333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences190216553
Sequences flagged as poor quality0
Sequence length101
%GC22

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGC13209520.6944463976276555TruSeq Adapter, Index 11 (100% over 50bp)
AAGTAGAAGATGGTATATGAGATGTAGTTGTGATTGGAGTTTAGATGTGT8336120.438243668520268No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATG7547970.39680931448694684TruSeq Adapter, Index 11 (100% over 49bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)