FastQCFastQC Report
Wed 15 May 2024
EGAF00000861410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000861410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences206179142
Total Bases20.8 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC21

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATACAACAACCACCAAAATCTACACTCTTTCCCTACACAACACTCT4829040.2342157384668911Illumina Single End PCR Primer 1 (95% over 24bp)
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC3691340.1790355689810757Illumina Single End PCR Primer 1 (100% over 50bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)