FastQCFastQC Report
Wed 22 Feb 2023
EGAF00000861500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000861500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36902833
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGGGG2437800.6605996889181923Illumina Single End PCR Primer 1 (97% over 48bp)
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTTTT504690.1367618578226772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)