FastQCFastQC Report
Wed 14 Sep 2022
EGAF00000861503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000861503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35706175
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC2877780.8059614338416254TruSeq Adapter, Index 2 (100% over 51bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC1355860.37972703600987784TruSeq Adapter, Index 2 (100% over 50bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT420290.1177079314712371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)