FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000887697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000887697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48474852
Sequences flagged as poor quality0
Sequence length42
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAACAAGGAAACCAAGATCGGAAGAGCTCGTATGCCGTCTT2361820.4872258300035656Illumina Single End Adapter 2 (100% over 27bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTAGAGATC1716100.354018615673133TruSeq Adapter, Index 3 (97% over 37bp)
AAGTCCGCAGCGAAGATCAAGGACCTGCGGACCTGGGAAGTC1304800.2691704969001246No Hit
CAAACAAGGAAACCAAGATCAGGTAAGTCTGAGTGAAACCCA1269720.2619337548467399No Hit
CAAACAAGGAAACCAAGATCGAGGTAAGTCTGAGTGAAACCC1020710.2105648512346154No Hit
CAAACAAGGAAACCAAGATCGGAGGTAAGTCTGAGTGAAACC937890.1934797036616017No Hit
CAAACAAGGAAACCAAGATCGGAAGGTAAGTCTGAGTGAAAC724960.14955383463574062No Hit
CAAACAAGGAAACCAAGATCGGAAAGGTAAGTCTGAGTGAAA604650.12473478000510449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)