FastQCFastQC Report
Sat 1 Apr 2023
EGAF00000887701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000887701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33435349
Sequences flagged as poor quality0
Sequence length42
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTCCGCAGCGAAGATCAAGGACCTGCGGACCTGGGAAGTC6659751.9918290668956378No Hit
CAAACAAGGAAACCAAGATCAGGTAAGTCTGAGTGAAACCCA463370.1385868590754055No Hit
CAAACAAGGAAACCAAGATCGGAAGAGCTCGTATGCCGTCTT461950.13816215885768085Illumina Single End Adapter 2 (100% over 27bp)
CAAACAAGGAAACCAAGATCCACAGATGTGAAGCGACTTGTC359280.10745513677754641No Hit
TAGTCCGCAGCGAAGATCAAGGACCTGCGGACCTGGGAAGTC348450.10421604990574497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)