FastQCFastQC Report
Wed 14 Sep 2022
EGAF00000887702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000887702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48063745
Sequences flagged as poor quality0
Sequence length42
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTCCGCAGCGAAGATCAAGGACCTGCGGACCTGGGAAGTC8051861.6752460716492235No Hit
CAAACAAGGAAACCAAGATCGGAAGAGCTCGTATGCCGTCTT626950.13044135449703306Illumina Single End Adapter 2 (100% over 27bp)
CAAACAAGGAAACCAAGATCAGGTAAGTCTGAGTGAAACCCA624830.1300002735949935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)