FastQCFastQC Report
Tue 27 Sep 2022
EGAF00000887703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000887703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41801422
Sequences flagged as poor quality0
Sequence length42
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTCCGCAGCGAAGATCAAGGACCTGCGGACCTGGGAAGTC6871821.643920151807276No Hit
CAAACAAGGAAACCAAGATCGGAAGAGCTCGTATGCCGTCTT493350.11802230077244741Illumina Single End Adapter 2 (100% over 27bp)
CAAACAAGGAAACCAAGATCAGGTAAGTCTGAGTGAAACCCA493280.11800555493064327No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)