FastQCFastQC Report
Sun 2 Apr 2023
EGAF00000887704

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000887704
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46259513
Sequences flagged as poor quality0
Sequence length42
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAAATC3275340.7080359881869055TruSeq Adapter, Index 19 (97% over 42bp)
CAAACAAGGAAACCAAGATCGGAAGAGCTCGTATGCCGTCTT2275800.49196367458516044Illumina Single End Adapter 2 (100% over 27bp)
CAAACAAGGAAACCAAGATCAGGTAAGTCTGAGTGAAACCCA1220390.26381384516520956No Hit
AAGTCCGCAGCGAAGATCAAGGACCTGCGGACCTGGGAAGTC1199460.25928937038312533No Hit
CAAACAAGGAAACCAAGATCGAGGTAAGTCTGAGTGAAACCC972610.21025080830401308No Hit
CAAACAAGGAAACCAAGATCGGAGGTAAGTCTGAGTGAAACC901250.19482479203791012No Hit
CAAACAAGGAAACCAAGATCGGAAGGTAAGTCTGAGTGAAAC687450.14860727133033158No Hit
CAAACAAGGAAACCAAGATCGGAAAGGTAAGTCTGAGTGAAA582520.1259243693291799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)