FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000888017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130407
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAAACTCAACAACCTAAACCCCGAAAATAACTACTAAACTACCTACCG88476.784145022889875No Hit
CCCAAAATCCTAAAATTCTCCTAACCACAAAAACTCCCCACAAAAACAAA58724.502825768555369No Hit
CTCCAAACTACAAAAAACTCCTTCAAATCACCTATCCACCTCCTAAAACA57984.446080348447553No Hit
ACTAAATAAAAACTTACCCAACCCCACTCTACCAATCCCCTTCCTCCCAT56704.34792610826106No Hit
AAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA49683.809611447238262No Hit
TACCTTCCAAAAACTCTAAACATCCCCGTACAACTACGAAACACCCGAAA48023.6823176669964033No Hit
ATATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAAAC47713.658545936951237No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA41543.185411826052283No Hit
ACAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCGTCCTAACCT38812.976067235654528No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCGCCACAACCCGAACACTA37872.903985215517572No Hit
TAATACCAACTATACCACTCAACTCCGAAAAATTACCTTCCAAAAACTCT36502.798929505317966No Hit
AACTAATCTAAACCTCCTAACCTCAAACGATCTATCTACTTCTACCTCCG31542.4185818245953055No Hit
CCCTTTAAACTATCCCACCTTTCTAAACGAAACCAATATACATCTTAAAT28832.210770894200465No Hit
AAAATTTAATCCTCAATCCAATCCTAAACCACCAACATCCTCTATTAATC28162.159393284102847No Hit
AAATAATAACATTAAATACTCCTCCCAACTTAACCAAACTTAAATCCTCC27322.0949795639804614No Hit
TAAAACTCACTACTATCCCCCACAAACTAAAACTAAAAAACAAACTCTAA24541.8818008235754216No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCGAAACCCATTCGAA23051.767543153358332No Hit
AACCTTTATTTAATCAAAACTACTTAATTCAAAAAATATCCACGTTACTC19401.4876502028265353No Hit
CCCTAAAAACAAACTAAAACTATAAAAAAAAAAATTCCACTAACCCCGAA19121.46617896278574No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAAACTCTACTAACCCATCTCCAA18801.4416404027391168No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAAAACTCTACTAACCCATCTCCA14651.1234059521344713No Hit
CCCTAAAAACAAACTAAAACTATAAAAAAAAAATTCCACTAACCCCGAAC13010.997645831895527No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAACTCTACTAACCCATCTCCAAA12040.9232633217542002No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAAAACCCCCCCAA11460.8787871816696956No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAAACCCCCCCAAC10270.7875344114963153No Hit
TACCTTCCAAAAACTCTAAACATCCCCATACAACTACAAAACACCCAAAA9610.7369236314001549No Hit
AATCTAAAAACCTCCTCTCCAAAACCTTATACAACCCCTCCTACCTGTAG8000.6134640011655816No Hit
TAATACCAACTATACCACTCAACTCCTAAAAATTACCTTCCAAAAACTCT7520.5766561610956467No Hit
CTCCCAACCCCCACTCCTACCTAAATTCCACAACTTCTGTAGAACCATGT7260.5567185810577653No Hit
AACCCAATCTAAAACCAAAAACCTACGCATCCAATATAAAAAAAACAACT7160.5490502810431955No Hit
CCCTAAAAACAAACTAAAACTATAAAAAAAAAAAATTCCACTAACCCCGA6570.5038073109572339No Hit
TAATACCAACTATACCACTCAACTCCAAAAAATTACCTTCCAAAAACTCT6090.466999470887299No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAAAAACTCTACTAACCCATCTCC5630.4317252908202781No Hit
ATATAATACCCACCTTCCAAACCACTAACCCGCAACCCAATCCTAAAAAC5480.42022284079842337No Hit
ATATCTCCTTACATCCCAACCTCTCCTTCCTCTAATATTTTTGTAGAACC5170.3964511107532571No Hit
CCCTTTAAACTATCCCACCTTTCTAAACTAAACCAATATACACCTTACGT5030.38571549073285943No Hit
CCTAAATAAAAACTTACCCAACCCCACTCTACCAATCCCCTTCCTCCCAT4930.3780471907182897No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAACCCCCCCAACA4800.36807840069934894No Hit
CCCTAAAAACAAACTAAAACTATAAAAAAAAATTCCACTAACCCCGAACC4240.32513592061775826No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAAAAACCCCCCCA3990.3059651705813338No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCGAAACCCATTCTAA3990.3059651705813338No Hit
ATATAATACCCACCTTCCAAACCACGAACCCTCAACCCAATCCTAAAAAC3860.29599638056239314No Hit
CAAATCCCTAATCTCACCTAAAAAAAAACTCTACTAACCCATCTCCAAAT3750.2875612505463664No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCTCCACAACCCGAACACTA3750.2875612505463664No Hit
CCAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCGTCCTAACCT3560.2729914805186838No Hit
TACCTTCCAAAAACTCTAAACATCCCCGTACAACTACGAAACACCCTAAA3480.266856840507028No Hit
CTATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAAAC3390.2599553704939152No Hit
ATATCTCCTTACATCCCAACCCCTCCTTCCTCTAATATTTTTGTAGAACC3160.24231828046040474No Hit
CCTACAAACCCTACAACAAATCCATACCCCCCGCCACAACCCGAACACTA3020.23158266044000703No Hit
CAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA2710.20781093039484075No Hit
CACCTTCCAAAAACTCTAAACATCCCCGTACAACTACGAAACACCCGAAA2710.20781093039484075No Hit
CTCCAAACTACAAAAAACTCCTTCAAATCACCTATCCACCTCCAAAAACA2530.19400799036861519No Hit
AAATAATAACATTAAATACTCCTCCCAACAAACCCACTCCCATCACATAA2310.1771377303365617No Hit
CAAAACTAACTCTAAAATTTCCTTTTTCAATCTTAACCCAATAACCAACT2180.167168940317621No Hit
CAATACCAACTATACCACTCAACTCCGAAAAATTACCTTCCAAAAACTCT2100.16103430030596516No Hit
CCCTAAAAACAAACTAAAACTATAAAAAAAAAAAAATTCCACTAACCCCG2080.15950064030305122No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA2060.15796698030013726No Hit
CCAAAACTCAACAACCTAAACCCGAAAATAACTACTAAACTACCTACCGC1930.14799819028119657No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAAAAAACTCTACTAACCCATCTC1910.1464645302782826No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCTAAACCCATTCGAA1890.14493087027536863No Hit
AACCCAATCTAAAACCAAAAACCTACTCATCCAATATAAAAAAAACAACT1870.1433972102724547No Hit
CACTAATCTAAACCTCCTAACCTCAAACGATCTATCTACTTCTACCTCCG1780.1364957402593419No Hit
AACTAATCTAAACCTCCTAACCTCAAACTATCTATCTACTTCTACCTCCG1740.133428420253514No Hit
ATATAATACCCACCTTCCAAACCACTAACCCTCAACCCAATCCTAAAAAC1730.132661590252057No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAACCCCCCCAACAA1670.12806061024331516No Hit
CAAATTTAATCCTCAATCCAATCCTAAACCACCAACATCCTCTATTAATC1660.1272937802418582No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAAAAAACCCCCCC1560.1196254802272884No Hit
CCCTTTAAACTATCCCACCTTTCTAAACTAAACCAATATACATCTTAAAT1560.1196254802272884No Hit
CAATAATAACATTAAATACTCCTCCCAACTTAACCAAACTTAAATCCTCC1520.1165581602214605No Hit
CCCTAAAAACAAACTAAAACTATAAAAAAAAAAATTCCACTAACCCCTAA1490.11425767021708959No Hit
CTCCCAACCCCCATTCCTACCTAAATTCCACAACTTCTGTAGAACCATGT1450.11119035021126167No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT1380.10582254020106283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)